Software
Quantum tensor networks, in particular matrix product states and operators (2013  today).
Work in progress, C and Mathematica code available at GitHub.
This implementation has been used for the simulations in the paper
"Scrambling and thermalization in a diffusive quantum manybody system" (arXiv:1612.02434).
Molecular dynamics simulations of classical anharmonic hardpoint particle chains (2014).
C source code and Mathematica test files are available at GitHub.
This code has been used for the simulations in the papers
"Current fluctuations for anharmonic chains in thermal equilibrium" [pdf] and
"Equilibrium timecorrelation functions for onedimensional hardpoint systems" [pdf].
Nonlinear fluctuating hydrodynamics for anharmonic chains (2013  2014).
A Mathematica package and demonstration file for calculating the coupling constants is available at
GitHub.
See the paper by Herbert Spohn "Nonlinear fluctuating hydrodynamics for anharmonic chains" [pdf], as well as
the papers "Equilibrium timecorrelation functions for onedimensional hardpoint systems" [pdf] and
"Dynamic correlators of FermiPastaUlam chains and nonlinear fluctuating hydrodynamics" [pdf].
FermiFab (2008  2014). Matlab and Mathematica toolbox for manyparticle quantum systems, available at SourceForge. See the corresponding paper "The FermiFab toolbox for fermionic manyparticle quantum systems" [pdf] for a detailed description. 
Matrixvalued quantum lattice Boltzmann method (summer 2013).
Lattice Boltzmann method (LBM) with quantum aspects.
The C source code and accompanying Mathematica file can be found here: [zip],
and the video shows a simulation from my paper [doi] (arXiv:1309.1656):
Implementation of the classical lattice Boltzmann method (LBM) using the D2Q9 and D3Q19 models (2013  2014). C implementation based on Nils Thürey's PhD thesis "Physically based animation of free surface flows with the lattice Boltzmann method" [pdf]. C source code and demonstration Mathematica files are available at GitHub. 
Generating integral formulas from Feynman diagrams using Mathematica (summer 2013).
Mathematica code including demo file: [zip].
Based on the paper "Derivation of a Matrixvalued Boltzmann equation for the Hubbard model"
(arXiv:1306.0934).
Automatically generate the integral expression corresponding to a given Feynman diagram.
The implementation uses pattern matching, but is still rather preliminary and will be further extended.
Matrixvalued Boltzmann equation for the nonintegrable Hubbard chain (winter 2012/2013). The C / Mathematica implementation of the simulations in the paper [pdf] is available at GitHub. A challenging part was the numerical discretization of the collision manifold such that the analytic symmetries are preserved. 
Volume RayCasting Renderer with Transfer Functions (DirectX implementation, summer 2012). Source code and binary files: [zip]. For demonstration purposes, not (yet) optimized for performance. Based on the tutorial Volume Rendering 102: Transfer Functions by Kyle Hayward. 

Volume RayCasting Renderer (DirectX implementation, summer 2012). Source code and binary files: [zip]. Note that the vertices of the virtual cube containing the volume voxel data do not use texture coordinates. Inspired by the article Volume Rendering 101. 
Simple Multigrid implementation using Matlab (spring 2012).
Matlab code available at GitHub.
Simple, pedagogical implementation of the Multigrid method for solving Poissonlike equations.
Reference: Ulrich Trottenberg, Cornelius W. Oosterlee, Anton Schuller. Multigrid, Academic Press (2001).
Quantum Espresso
UPF
(Unified Pseudopotential Format) Parser and XML exporter, both Java and C# (spring 2012).
Source code and binary files of the Java version [zip], and the C# version [zip].
Produces a W3Cconforming XML file with tags for the variables (note that the original UPF format is not W3Cconforming).
Some code snippets I've found useful.
Reshape array  [cdf, html]  Reshape an array, similar to the Matlab command 
Block diagonal matrix  [cdf, html]  Construct a blockdiagonal matrix 
Tensor dot product  [cdf, html]  Generalized dot product for tensors 
Purge sparse array  [cdf, html]  "Purge" a sparse array by removing the redundant array rules 
RealTime Radon Transform via the GPU Graphics Pipeline (fall 2010).
Implementation of the forward and inverse Radon transform in realtime on GPUs, using DirecX 11.
A short manuscript [pdf] provides more details.
The C++/shader source code, compiled binaries and project files (Visual Studio 2010) can be found here: [zip].
The corresponding paper "Comprehensive Analysis of HighPerformance Computing Methods for Filtered BackProjection"
[pdf] is an extension to fanbeam geometry.
Minimum system requirements: DirectX 10.0 capable graphics card, and the
"DirectX EndUser Runtimes (June 2010)"
(extract and run DXSetup.exe) on Windows 7 or Vista (SP 2).
Walking Biped Simulation v0.1 (Winter 2009  January 2010).
C++ implementation using NVidia PhysX 2.8
and DirectX 10 (not perfect yet ;)).
Inspired by the TED talk
"Torsten Reil builds better animations" (2003). The complete source code is available here:
[zip].
NSB Entropy Estimation (April  May 2009, updated September 2011).
A Mathematica and Matlab implementation of an algorithm for the
entropy estimation from undersampled discrete data: [zip].
Reference: Ilya Nemenman, Fariel Shafee, William Bialek. Entropy and inference, revisited
(arXiv:physics/0108025).
C++ container classes (October 2005). A platform independent collection of C++ container classes (similar to STL) with demo files: [zip], [tar]. Includes arrays, lists, sets, maps, hash sets, strings and a special arraylike class which uses a red black tree to sort out multiple elements.
Sharp3D (Summer 2004). Developing a graphics engine "from scratch" using C#. Complete source code [zip], media files [zip]. Practical programming course at the Fakultät für Informatik, TUM. I've ported some DirectX vertex and pixel shaders. 
Enhancing Stenciled Shadow Volumes (August 2003). Some technical details for storing vertex data in textures. I wrote this article as a high school student, so it's pretty out of date.
Torres (May  August 2003). PC version of the board game of the year 2000. I've been part of the software development team at RadonLabs, Berlin. 